StatusResultsProject nameInput dataWay of selecting bridges Last status changedJob submittedKeyUser IP
error Trajectory analysis Example of trajectory with error view.pdb.gz loops typed - trajectory 2015-12-31 12:00:00 2015-12-31 12:00:00 traj-error exampleIP
Trajectory analysis
Warning
  • ERROR(7) There were too few points in the loop. (The loop should comprise at least 3 Cα atoms).
  • ERROR(8) There is no bridge – the distance between bridge forming Cα atoms does not lie in the range 3.3-10.0 Å. (This is a security filter, checking if the given protein structure is correct. If user uploads a protein structure with the cysteine bridge, the distance should be in a given range. If user is sure, that the distance between bridge forming Cα atoms is correct, this check can be unticked).

Download trajectory analysis output

Trajectory analysis log:
            
            #Path to the analyzed file: input.xyz
            #Id_begin_chain id_end_chain id_begin_loop id_end_loop: 1 65 10 60
            #More detailed algorithm: False
            #More detailed output: False
            #Checked distances in the chain: True
            #Minimal distance between crossings (not to be reduced): 10
            #Minimal distance between crossing and tail end (not to be reduced): 3
            #Minimal distance between crossing and loop (not to be reduced): 3
            7289	 ERROR
            7290	 ERROR
            7291	 ERROR
            7292	 ERROR
            7293	 ERROR
            7294	 ERROR
            7295	 ERROR
            7296	 ERROR
            7297	 ERROR
            7298	 ERROR
            7299	 ERROR
            7300	 ERROR
            7301	 ERROR
            7302	 ERROR
            7303	 ERROR
            7304	 ERROR
            7305	 ERROR
            7306	 ERROR
            7307	 ERROR
            7308	 ERROR
            7309	 ERROR
            7310	 ERROR
            7311	 ERROR
            7312	 ERROR
            7313	 ERROR
            7314	 ERROR
            7315	 ERROR
            7316	 ERROR
            7317	 ERROR
            7318	 ERROR
            7319	 ERROR
            7320	 ERROR
            7321	 ERROR
            7322	 ERROR
            7323	 ERROR
            7324	 ERROR
            7325	 ERROR
            7326	 ERROR
            7327	 ERROR
            7328	 ERROR
            7329	 ERROR
            7330	 ERROR
            7331	 ERROR
            7332	 ERROR
            7333	 ERROR
            7334	 ERROR
            7335	 ERROR
            7336	 ERROR
            7337	 ERROR
            7338	 ERROR
            7339	 ERROR
            7340	 ERROR
            7341	 ERROR
            7342	 ERROR
            7343	 ERROR
            7344	 ERROR
            7345	 ERROR
            7346	 ERROR
            7347	 ERROR
            7348	 ERROR
            7349	 ERROR
            7350	 ERROR
            7351	 ERROR
            7352	 ERROR
            7353	 ERROR
            7354	 ERROR
            7355	 ERROR
            7356	 ERROR
            7357	 ERROR
            7358	 ERROR
            7359	 ERROR
            7360	 ERROR
            7361	 ERROR
            7362	 ERROR
            7363	 ERROR
            7364	 ERROR
            7365	 ERROR
            7366	 ERROR
            7367	 ERROR
            7368	 ERROR
            7369	 ERROR
            7370	 ERROR
            7371	 ERROR
            7372	 ERROR
            7373	 ERROR
            7374	 ERROR
            7375	 ERROR
            7376	 ERROR
            7377	 ERROR
            7378	 ERROR
            7379	 ERROR
            7380	 ERROR
            7381	 ERROR
            7382	 ERROR
            7383	 ERROR
            7384	 ERROR
            7385	 ERROR
            7386	 ERROR
            7387	 ERROR
            7388	 ERROR
            7389	 ERROR
            7390	 ERROR
            7391	 ERROR
            7392	 ERROR
            7393	 ERROR
            7394	 ERROR
            7395	 ERROR
            7396	 ERROR
            7397	 ERROR
            7398	 ERROR
            7399	 ERROR
            7400	 ERROR
            7401	 ERROR
            7402	 1 0 | +5 | | L+1N
            7403	 1 0 | +6 | | L+1N
            7404	 ERROR
            7405	 0 0 | | |  L0
            7406	 ERROR
            7407	 ERROR
            7408	 ERROR
            7409	 ERROR
            7410	 ERROR
            

Each line of the output consists of the number of frame followed by: numbers of piercings for two tails - indexes of piercings on each tail - and lasso type of the loop (separated by "|"). The details are described in Help.

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LassoProt | Interdisciplinary Laboratory of Biological Systems Modelling