StatusResultsProject nameInput dataWay of selecting bridges Last status changedJob submittedKeyUser IP
finished Trajectory analysis Example of short trajectory, less detailed output view.pdb.gz loops typed - trajectory 2015-12-31 12:00:00 2015-12-31 12:00:00 trajectory exampleIP
Trajectory analysis

Download trajectory analysis output

Trajectory analysis log:
            
            #Path to the analyzed file: input.xyz
            #Id_begin_chain id_end_chain id_begin_loop id_end_loop: 1 65 36 65
            #More detailed algorithm: False
            #More detailed output: False
            #Checked distances in the chain: True
            #Minimal distance between crossings (not to be reduced): 10
            #Minimal distance between crossing and tail end (not to be reduced): 3
            #Minimal distance between crossing and loop (not to be reduced): 3
            7289	 0 0 | | |  L0
            7290	 0 0 | | |  L0
            7291	 0 0 | | |  L0
            7292	 0 0 | | |  L0
            7293	 0 0 | | |  L0
            7294	 0 0 | | |  L0
            7295	 0 0 | | |  L0
            7296	 0 0 | | |  L0
            7297	 0 0 | | |  L0
            7298	 0 0 | | |  L0
            7299	 0 0 | | |  L0
            7300	 0 0 | | |  L0
            7301	 0 0 | | |  L0
            7302	 0 0 | | |  L0
            7303	 0 0 | | |  L0
            7304	 1 0 | +30 | | L+1N
            7305	 1 0 | +31 | | L+1N
            7306	 1 0 | +28 | | L+1N
            7307	 1 0 | +27 | | L+1N
            7308	 1 0 | +24 | | L+1N
            7309	 1 0 | +23 | | L+1N
            7310	 1 0 | +23 | | L+1N
            7311	 1 0 | +23 | | L+1N
            7312	 1 0 | +21 | | L+1N
            7313	 1 0 | +24 | | L+1N
            7314	 1 0 | +24 | | L+1N
            7315	 1 0 | +23 | | L+1N
            7316	 1 0 | +21 | | L+1N
            7317	 1 0 | +21 | | L+1N
            7318	 1 0 | +23 | | L+1N
            7319	 1 0 | +17 | | L+1N
            7320	 1 0 | +18 | | L+1N
            7321	 1 0 | +23 | | L+1N
            7322	 1 0 | +24 | | L+1N
            7323	 1 0 | +25 | | L+1N
            7324	 1 0 | +26 | | L+1N
            7325	 1 0 | +24 | | L+1N
            7326	 1 0 | +25 | | L+1N
            7327	 1 0 | +23 | | L+1N
            7328	 1 0 | +22 | | L+1N
            7329	 1 0 | +22 | | L+1N
            7330	 1 0 | +24 | | L+1N
            7331	 1 0 | +25 | | L+1N
            7332	 1 0 | +22 | | L+1N
            7333	 1 0 | +21 | | L+1N
            7334	 1 0 | +19 | | L+1N
            7335	 1 0 | +19 | | L+1N
            7336	 1 0 | +21 | | L+1N
            7337	 1 0 | +20 | | L+1N
            7338	 1 0 | +21 | | L+1N
            7339	 1 0 | +20 | | L+1N
            7340	 1 0 | +20 | | L+1N
            7341	 1 0 | +19 | | L+1N
            7342	 1 0 | +21 | | L+1N
            7343	 1 0 | +23 | | L+1N
            7344	 1 0 | +20 | | L+1N
            7345	 1 0 | +19 | | L+1N
            7346	 1 0 | +22 | | L+1N
            7347	 1 0 | +26 | | L+1N
            7348	 1 0 | +27 | | L+1N
            7349	 1 0 | +28 | | L+1N
            7350	 1 0 | +29 | | L+1N
            7351	 1 0 | +27 | | L+1N
            7352	 1 0 | +27 | | L+1N
            7353	 1 0 | +27 | | L+1N
            7354	 1 0 | +26 | | L+1N
            7355	 1 0 | +27 | | L+1N
            7356	 1 0 | +23 | | L+1N
            7357	 1 0 | +21 | | L+1N
            7358	 1 0 | +20 | | L+1N
            7359	 1 0 | +21 | | L+1N
            7360	 1 0 | +20 | | L+1N
            7361	 1 0 | +19 | | L+1N
            7362	 1 0 | +20 | | L+1N
            7363	 1 0 | +20 | | L+1N
            7364	 1 0 | +19 | | L+1N
            7365	 1 0 | +20 | | L+1N
            7366	 1 0 | +20 | | L+1N
            7367	 1 0 | +18 | | L+1N
            7368	 1 0 | +19 | | L+1N
            7369	 1 0 | +18 | | L+1N
            7370	 1 0 | +17 | | L+1N
            7371	 1 0 | +17 | | L+1N
            7372	 1 0 | +14 | | L+1N
            7373	 1 0 | +14 | | L+1N
            7374	 1 0 | +10 | | L+1N
            7375	 1 0 | +10 | | L+1N
            7376	 1 0 | +11 | | L+1N
            7377	 1 0 | +10 | | L+1N
            7378	 1 0 | +11 | | L+1N
            7379	 1 0 | +11 | | L+1N
            7380	 1 0 | +13 | | L+1N
            7381	 1 0 | +13 | | L+1N
            7382	 1 0 | +12 | | L+1N
            7383	 1 0 | +10 | | L+1N
            7384	 1 0 | +11 | | L+1N
            7385	 1 0 | +12 | | L+1N
            7386	 1 0 | +12 | | L+1N
            7387	 1 0 | +9 | | L+1N
            7388	 1 0 | +6 | | L+1N
            7389	 1 0 | +8 | | L+1N
            7390	 1 0 | +10 | | L+1N
            7391	 1 0 | +10 | | L+1N
            7392	 1 0 | +7 | | L+1N
            7393	 1 0 | +5 | | L+1N
            7394	 1 0 | +4 | | L+1N
            7395	 0 0 | | |  L0
            7396	 1 0 | +3 | | L+1N
            7397	 1 0 | +3 | | L+1N
            7398	 1 0 | +4 | | L+1N
            7399	 1 0 | +4 | | L+1N
            7400	 1 0 | +4 | | L+1N
            7401	 1 0 | +4 | | L+1N
            7402	 1 0 | +6 | | L+1N
            7403	 1 0 | +6 | | L+1N
            7404	 0 0 | | |  L0
            7405	 0 0 | | |  L0
            7406	 0 0 | | |  L0
            7407	 0 0 | | |  L0
            7408	 0 0 | | |  L0
            7409	 0 0 | | |  L0
            7410	 0 0 | | |  L0
            

Each line of the output consists of the number of frame followed by: numbers of piercings for two tails - indexes of piercings on each tail - and lasso type of the loop (separated by "|"). The details are described in Help.

Example frame from trajectory - number: 7304
Fingerprint   L1
Select
Bridge typeLoop rangeLoop lengthN-term crossingsC-term crossingsN-end lengthC-end lengthLasso loop area
view details
L1 L+1N 36-65 30
+30
+30
35 -65 892
single
lasso
Run job for selected frame
More accurate algorithm - single frame version

Use single frame version of algorithm instead of simplified algorithm for trajectories. May vary in results.

This job will be automatically deleted within 14 days after submission

LassoProt | Interdisciplinary Laboratory of Biological Systems Modelling