| /static/lasso_data/<pdbid>/<chain>/<pdbid>_<chain>.pdb.gz | For every protein with lassos in the LassoProt database it is possible to download a trimmed gzipped PDB file. |
| /static/lasso_data/<pdbid>/<chain>/chain_<pdbid>_<chain>.xyz | For every protein with lassos in the LassoProt database it is possible to download a file containing the 3D coordinates of residues in the chains. |
| /files/<pdbid>_<chain>_all.tar.bz2 | For every protein chain with lassos in the LassoProt database it is possible to download a file containing all the files that contain lassos description and other results. |
| /lasso_all_amide.txt.gz | List all chains with amide bridges in LassoProt |
| /lasso_all_ester.txt.gz | List all chains with ester bridges in LassoProt |
| /lasso_all_others.txt.gz | List all chains with other types of bridges in LassoProt |
| /lasso_all_ssbridge.txt.gz | List all chains with ss-bond bridges in LassoProt |
| /lasso_all_thioester.txt.gz | List all chains with thioester bridges in LassoProt |
| /artifacts.txt.gz | List all artifact chains with lasso in LassoProt |
| /errors.txt.gz | List all errors in LassoProt |
| /lasso.txt | List all chains with lassos in LassoProt |
| /noloop.txt.gz | List all chains with no lassos in LassoProt |
| /trivial_loop_artifacts.txt.gz | List all artifact chains with a trivial loop in LassoProt |
| /trivial_loop.txt.gz | List all chains with a trivial loop in LassoProt |
The results page of any search run on LassoProt has a "raw" button which can be used to open a CSV formatted list of results
Example - display CSV formatted list of Non-redundant protein chains with lasso type L_1 and all kinds of bridges
The query can be specified using the following GET parameters
| Parameter | Values/Type | Description |
|---|---|---|
| Parameters for searching for lassos | ||
| raw | {0, 1} | if 1 returns results as a "raw" text file instead of a webpage |
| lassoType | String | Show results for given type of lasso - please have a look at the Search page to see examples |
| bridgeType | {ssbridge, amide, ester, thioester, others} | Filter results for a given type of bridge (or bridges) - the string may contain a space (%2C) separated list of any of these types of bridges |
| fingerprinttags | String | Show results for given type of lasso shown as fingerprint - please have a look at the bottom of the Search page to see examples |
| artifact | {0, 1} | if 1 - show results for artifacts |
| set | {0, 1} | if 1 returns full list of results, if 0 or empty only for Non-Redundant chains |
| loop_len | Integer;Integer | Loop length between values |
| N_end_len | Integer;Integer | Loop N-end length between values |
| C_end_len | Integer;Integer | Loop C-end length between values |
| loop_area | Integer;Integer | Area of a minimal surface spanned on a loop between values |
| loop_area_function | Integer;Integer | Loop area between values - this function divides an area of minimal surface spanned on a loop by a squared length of the loop |
| molkey | String | return results for the given Molecule Keyword |
| moltag | String | return results for the given Molecule Tags |
| pfam | String | return results for the given PFAM descriptor |
| ec | String | return results for the given EC code |
| cath | String | return results for the given CATH topology |
| catha | String | return results for the given CATH architecture |
| cathc | String | return results for the given CATH class |
| caths | String | return results for the given CATH Organism type |
| tag | String | return results for the given Tag keyword |
