| Status | Results | Project name | Input data | Way of selecting bridges | Last status changed | Job submitted | Key | User IP |
|---|---|---|---|---|---|---|---|---|
| finished | Trajectory analysis | Example of short trajectory, more detailed output | view.pdb.gz | loops typed - trajectory | 2015-12-31 12:00:00 | 2015-12-31 12:00:00 | traj-output | exampleIP |
Download trajectory analysis output
Trajectory analysis log:
#Path to the analyzed file: input.xyz
#Id_begin_chain id_end_chain id_begin_loop id_end_loop: 1 65 36 65
#More detailed algorithm: False
#More detailed output: True
#Checked distances in the chain: True
#Minimal distance between crossings (not to be reduced): 10
#Minimal distance between crossing and tail end (not to be reduced): 3
#Minimal distance between crossing and loop (not to be reduced): 3
7289 0 0 1 X X XX 0 0 X X XX L0 XX 24.6634
7290 0 0 1 X X XX 0 0 X X XX L0 XX 23.3525
7291 0 0 1 X X XX 0 0 X X XX L0 XX 23.1461
7292 0 0 1 X X XX 0 0 X X XX L0 XX 23.5077
7293 0 0 1 X X XX 0 0 X X XX L0 XX 22.1639
7294 0 0 1 X X XX 0 0 X X XX L0 XX 23.1875
7295 0 0 1 X X XX 0 0 X X XX L0 XX 23.1469
7296 0 0 1 X X XX 0 0 X X XX L0 XX 21.2441
7297 0 0 1 X X XX 0 0 X X XX L0 XX 23.5527
7298 0 0 1 X X XX 0 0 X X XX L0 XX 26.0754
7299 0 0 1 X X XX 0 0 X X XX L0 XX 27.0585
7300 0 0 1 X X XX 0 0 X X XX L0 XX 27.666
7301 0 0 1 X X XX 0 0 X X XX L0 XX 28.2739
7302 0 0 1 X X XX 0 0 X X XX L0 XX 28.9557
7303 1 0 1 X +34 X XX 0 0 X X XX L0 XX 28.0266
7304 1 0 1 X +30 X XX 1 0 X +30 X XX L+1N XX 27.5856
7305 1 0 1 X +31 X XX 1 0 X +31 X XX L+1N XX 27.276
7306 1 0 1 X +28 X XX 1 0 X +28 X XX L+1N XX 25.8706
7307 1 0 1 X +27 X XX 1 0 X +27 X XX L+1N XX 24.5822
7308 1 0 1 X +24 X XX 1 0 X +24 X XX L+1N XX 22.9865
7309 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 23.2788
7310 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 24.1767
7311 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 25.3283
7312 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 26.0079
7313 1 0 1 X +24 X XX 1 0 X +24 X XX L+1N XX 26.4904
7314 1 0 1 X +24 X XX 1 0 X +24 X XX L+1N XX 25.8954
7315 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 26.0715
7316 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 25.0986
7317 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 24.6163
7318 3 0 1 X +20 -21 +23 X XX 1 0 X +23 X XX L+1N XX 23.8884
7319 1 0 1 X +17 X XX 1 0 X +17 X XX L+1N XX 23.6475
7320 1 0 1 X +18 X XX 1 0 X +18 X XX L+1N XX 24.2112
7321 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 22.8662
7322 1 0 1 X +24 X XX 1 0 X +24 X XX L+1N XX 22.2268
7323 1 0 1 X +25 X XX 1 0 X +25 X XX L+1N XX 23.18
7324 1 0 1 X +26 X XX 1 0 X +26 X XX L+1N XX 23.6491
7325 1 0 1 X +24 X XX 1 0 X +24 X XX L+1N XX 25.4207
7326 1 0 1 X +25 X XX 1 0 X +25 X XX L+1N XX 26.7935
7327 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 27.3958
7328 1 0 1 X +22 X XX 1 0 X +22 X XX L+1N XX 26.9326
7329 1 0 1 X +22 X XX 1 0 X +22 X XX L+1N XX 24.5604
7330 1 0 1 X +24 X XX 1 0 X +24 X XX L+1N XX 22.0997
7331 1 0 1 X +25 X XX 1 0 X +25 X XX L+1N XX 22.2278
7332 1 0 1 X +22 X XX 1 0 X +22 X XX L+1N XX 21.1035
7333 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 22.3568
7334 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 22.5764
7335 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 22.6001
7336 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 21.9349
7337 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 21.4442
7338 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 21.2617
7339 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 21.0852
7340 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 21.9774
7341 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 22.6511
7342 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 22.2641
7343 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 21.3567
7344 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 21.2562
7345 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 22.2001
7346 1 0 1 X +22 X XX 1 0 X +22 X XX L+1N XX 22.9142
7347 1 0 1 X +26 X XX 1 0 X +26 X XX L+1N XX 23.4061
7348 1 0 1 X +27 X XX 1 0 X +27 X XX L+1N XX 23.6322
7349 1 0 1 X +28 X XX 1 0 X +28 X XX L+1N XX 22.6011
7350 1 0 1 X +29 X XX 1 0 X +29 X XX L+1N XX 22.8884
7351 1 0 1 X +27 X XX 1 0 X +27 X XX L+1N XX 23.1639
7352 1 0 1 X +27 X XX 1 0 X +27 X XX L+1N XX 24.5766
7353 1 0 1 X +27 X XX 1 0 X +27 X XX L+1N XX 26.6068
7354 1 0 1 X +26 X XX 1 0 X +26 X XX L+1N XX 26.1831
7355 1 0 1 X +27 X XX 1 0 X +27 X XX L+1N XX 24.463
7356 1 0 1 X +23 X XX 1 0 X +23 X XX L+1N XX 22.3719
7357 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 24.2121
7358 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 24.4976
7359 1 0 1 X +21 X XX 1 0 X +21 X XX L+1N XX 24.8835
7360 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 25.1654
7361 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 25.7599
7362 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 24.3973
7363 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 22.7373
7364 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 22.0248
7365 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 21.8103
7366 1 0 1 X +20 X XX 1 0 X +20 X XX L+1N XX 21.2604
7367 1 0 1 X +18 X XX 1 0 X +18 X XX L+1N XX 21.2131
7368 1 0 1 X +19 X XX 1 0 X +19 X XX L+1N XX 21.366
7369 1 0 1 X +18 X XX 1 0 X +18 X XX L+1N XX 22.2442
7370 1 0 1 X +17 X XX 1 0 X +17 X XX L+1N XX 22.6649
7371 1 0 1 X +17 X XX 1 0 X +17 X XX L+1N XX 22.0767
7372 1 0 1 X +14 X XX 1 0 X +14 X XX L+1N XX 21.4404
7373 1 0 1 X +14 X XX 1 0 X +14 X XX L+1N XX 21.7324
7374 1 0 1 X +10 X XX 1 0 X +10 X XX L+1N XX 21.0371
7375 1 0 1 X +10 X XX 1 0 X +10 X XX L+1N XX 20.2625
7376 1 0 1 X +11 X XX 1 0 X +11 X XX L+1N XX 19.6182
7377 1 0 1 X +10 X XX 1 0 X +10 X XX L+1N XX 19.4075
7378 1 0 1 X +11 X XX 1 0 X +11 X XX L+1N XX 18.3728
7379 1 0 1 X +11 X XX 1 0 X +11 X XX L+1N XX 18.5417
7380 1 0 1 X +13 X XX 1 0 X +13 X XX L+1N XX 17.9164
7381 1 0 1 X +13 X XX 1 0 X +13 X XX L+1N XX 18.0812
7382 1 0 1 X +12 X XX 1 0 X +12 X XX L+1N XX 19.0542
7383 1 0 1 X +10 X XX 1 0 X +10 X XX L+1N XX 18.7771
7384 1 0 1 X +11 X XX 1 0 X +11 X XX L+1N XX 17.4894
7385 1 0 1 X +12 X XX 1 0 X +12 X XX L+1N XX 16.909
7386 1 0 1 X +12 X XX 1 0 X +12 X XX L+1N XX 17.2114
7387 1 0 1 X +9 X XX 1 0 X +9 X XX L+1N XX 18.125
7388 1 0 1 X +6 X XX 1 0 X +6 X XX L+1N XX 18.6366
7389 1 0 1 X +8 X XX 1 0 X +8 X XX L+1N XX 19.3163
7390 1 0 1 X +10 X XX 1 0 X +10 X XX L+1N XX 19.1632
7391 1 0 1 X +10 X XX 1 0 X +10 X XX L+1N XX 19.2293
7392 1 0 1 X +7 X XX 1 0 X +7 X XX L+1N XX 20.6672
7393 1 0 1 X +5 X XX 1 0 X +5 X XX L+1N XX 21.3997
7394 1 0 1 X +4 X XX 1 0 X +4 X XX L+1N XX 20.2618
7395 1 0 1 X +2 X XX 0 0 X X XX L0 XX 21.3921
7396 1 0 1 X +3 X XX 1 0 X +3 X XX L+1N XX 21.4376
7397 1 0 1 X +3 X XX 1 0 X +3 X XX L+1N XX 21.9286
7398 1 0 1 X +4 X XX 1 0 X +4 X XX L+1N XX 22.0346
7399 1 0 1 X +4 X XX 1 0 X +4 X XX L+1N XX 21.1386
7400 1 0 1 X +4 X XX 1 0 X +4 X XX L+1N XX 21.0645
7401 1 0 1 X +4 X XX 1 0 X +4 X XX L+1N XX 21.1503
7402 1 0 1 X +6 X XX 1 0 X +6 X XX L+1N XX 21.6115
7403 1 0 1 X +6 X XX 1 0 X +6 X XX L+1N XX 20.5414
7404 0 0 1 X X XX 0 0 X X XX L0 XX 21.0832
7405 0 0 1 X X XX 0 0 X X XX L0 XX 19.9548
7406 0 0 1 X X XX 0 0 X X XX L0 XX 19.9147
7407 0 0 1 X X XX 0 0 X X XX L0 XX 21.9675
7408 0 0 1 X X XX 0 0 X X XX L0 XX 22.677
7409 0 0 1 X X XX 0 0 X X XX L0 XX 20.1958
7410 0 0 1 X X XX 0 0 X X XX L0 XX 19.6389
Each line of the output consists of the number of frame followed by: numbers of piercings for two tails before reduction and information if surface is orientable - indexes of all piercings (reduced ones as well) on each tail - numbers of piercings after reduction for two tails - indexes of piercings (only not reduced) on each tail - lasso type of the loop - and radius of gyration (separated by "X" and "XX"). The details are described in Help.
| Bridge type | Loop range | Loop length | N-term crossings | C-term crossings | N-end length | C-end length | Lasso loop area | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| view details |
 |
L+1N | 36-65 | 30 | +30 |
35 | -65 | 892 | single lasso |
|||||